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Y叔 2018-06-01

clusterProfiler的引用已经开始超500,向1000迈进,有了《自动抓取论文的引用数据》的R包,通过简单封装,一条指令就可以把引用历史画出来:



下面是部分使用clusterProfiler的文章:

  • p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage. Nature Communications. 2018, 9:1017.

  • Transcription factor Hoxb5 reprograms B cells into functional T lymphocytes. Nature Immunology. 2018.

  • The effects of death and post-mortem cold ischemia on human tissue transcriptomes. Nature Communications. 2018, 9:490.

  • Haploinsufficiency leads to neurodegeneration in C9ORF72 ALS/FTD human induced motor neurons. Nature Medicine. 2018

  • High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening. Nature Communications. 2018, 364.

  • The prolyl isomerase FKBP25 regulates microtubule polymerization impacting cell cycle progression and genomic stability. Nucleic Acids Research. 2018

  • Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner. Cell. 2018.

  • Gene co-expression analysis for functional classification and gene–disease predictions. Brief Bioinform. 2018.

  • The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting. Genome Research.  2018, 28:132-143 .

  • Proteomic analysis of postsynaptic proteins in regions of the human neocortex. Nature Neuroscience. 2018, 21(1):130-138.

  • Mutant-IDH1-dependent chromatin state reprogramming, reversibility, and persistence. Nature Genetics. 2018, 50:62–72.

  • EGFR feedback-inhibition by Ran-binding protein 6 is disrupted in cancer Nature Communications. 2017, 8:2035.

  • FMRFamide-like peptides expand the behavioral repertoire of a densely connected nervous system. PNAS. 2017, 114(50):E10726–E10735.

  • Regeneration of the entire human epidermis using transgenic stem cells. Nature. 2017, 551:327–332.

  • RNA editing by ADAR1 leads to context-dependent transcriptome-wide changes in RNA secondary structure. Nature Communications. 2017, 8:1440.

  • Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin. PNAS. 2017, 114(42):E8930-E8939.

  • qSVA framework for RNA quality correction in differential expression analysis. PNAS. 2017, 114(27):7130-7135.

  • H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity. Genome Biology. 2017, 18:69

  • The Long Noncoding RNA Landscape of the Ischemic Human Left Ventricle. Circulation: Cardiovascular Genetics. 2017, 10:e001534.

  • Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans. Nature. 2017, 541:102–106.

  • Dpy30 is critical for maintaining the identity and function of adult hematopoietic stem cells. The Journal of Experimental Medicine. 2016, 213(11):2349-2364

  • Classification and characterization of microsatellite instability across 18 cancer types. Nature Medicine. 2016, 22:1342–1350.

  • Coordinate redeployment of PRC1 proteins suppresses tumor formation during Drosophila development. Nature Genetics. 2016, 48:1436–1442.

  • Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters. Cell. 2016, 167(5):1369-1384.

  • Mining kidney toxicogenomic data by using gene co-expression modules. BMC Genomics. 2016, 17:790.

  • Local microRNA delivery targets Palladin and prevents metastatic breast cancer. Nature Communications. 2016, 7:12868

  • Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice. Nature Microbiology. 2016, 1:16140.

  • Comprehensive identification of internal structure and alternative splicing events in circular RNAs. Nature Communications. 2016, 7:12060.

  • Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms. Genome Biology. 2016, 17:191.

  • TP53 regulates miRNA association with AGO2 to remodel the miRNA–mRNA interaction network. Genome Research. 2016, 26:331-341.

  • ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems. 2016, 12(2):477-479.

  • ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparision and visualization. Bioinformatics. 2015, 31(14):2382-2383.

  • DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics. 2015, 31(4):608-609.

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